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def protein (Porphyromonas gingivalis W83) - STRING interaction network
"def" - Peptide deformylase in Porphyromonas gingivalis W83
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second shell of interactors
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Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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defPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (189 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (323 aa)
 
  0.977
PG_1768
Magnesium chelatase subunit D/I family protein (513 aa)
          0.874
PG_2200
Hypothetical protein (695 aa)
   
 
  0.847
rplQ
Ribosomal protein L17 (160 aa)
     
 
  0.793
PG_2199
ABC transporter ATP-binding protein (645 aa)
   
        0.747
PG_2202
Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (138 aa)
              0.739
rplV
Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (116 aa)
     
      0.728
PG_1300
Hypothetical protein (179 aa)
 
        0.711
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (222 aa)
 
   
  0.670
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate (296 aa)
         
  0.652
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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