STRINGSTRING
PG_2225 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_2225" - Hypothetical protein in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_2225Hypothetical protein (89 aa)    
Predicted Functional Partners:
PG_2224
Hypothetical protein (185 aa)
 
     
  0.964
PG_2226
Hypothetical protein (740 aa)
         
  0.817
PG_2227
Hypothetical protein (218 aa)
         
  0.816
PG_1431
LuxR family DNA-binding response regulator (227 aa)
     
 
  0.668
PG_1237
LuxR family transcriptional regulator (199 aa)
     
 
  0.668
PG_1622
DNA topoisomerase IV subunit A (898 aa)
     
 
  0.535
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (859 aa)
     
 
  0.535
hpt
Hypoxanthine phosphoribosyltransferase (178 aa)
       
    0.527
PG_2223
Glycosyl transferase group 2 family protein (322 aa)
   
        0.486
dinF
DNA-damage-inducible protein F (436 aa)
         
  0.416
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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