STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sojSpoOJ regulator protein; Similar to GB:M25108, SP:P05106, and PID:386833; identified by sequence similarity; putative. (258 aa)    
Predicted Functional Partners:
spo0J
spoOJ protein; Similar to GB:M14219, SP:P07585, PID:181170, and PID:609452; identified by sequence similarity; putative; Belongs to the ParB family.
 
 0.998
PG_0140
Hypothetical protein; Identified by Glimmer2; putative.
       0.764
PG_0139
Membrane-bound lytic murein transglycosylase D, putative; Similar to GB:U00148, and PID:401712; identified by sequence similarity; putative.
       0.763
PG_1318
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to PFAM protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.567
PG_1660
RNA polymerase sigma-70 factor, ECF subfamily.
   
  
 0.567
PG_1827
RNA polymerase sigma-70 factor, ECF subfamily.
   
  
 0.567
PG_1543
Thioesterase family protein.
   
  
 0.565
PG_0543
Transcriptional regulator, putative; Identified by match to PFAM protein family HMM PF01381.
      
 0.560
PG_0162
RNA polymerase sigma-70 factor, ECF subfamily.
   
  
 0.556
PG_0214
RNA polymerase sigma-70 factor, ECF subfamily; Similar to GB:L14266, and PID:293079; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.555
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.