STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynBSimilar to xylanase; PMID: 9294005 best DB hits: BLAST: embl:CAA72323.1; (Y11564) xylanase [Rhodothermus marinus]; E=2e-06 embl:CAA60868.1; (X87417) xylanase [Rhodothermus marinus]; E=2e-06 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=4e-06 COG: sll0656_1; COG3204 Uncharacterized BCR; E=6e-06 XF0845; COG1472 Beta-glucosidase-related glycosidases; E=0.008 PFAM: PF00404; Dockerin type I repeat; E=0.49 PF02369; Bacterial Ig-like domain (group 1); E=0.16. (1564 aa)    
Predicted Functional Partners:
RB9911
Endo-1,4-beta-xylanase; PMID: 3139632 PMID: 7664125 best DB hits: BLAST: gb:AAA90913.1; (U33060) endo-1,4-beta-xylanase [Thermotoga sp.]; E=2e-33 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=3e-33 swissprot:Q60041; XYNB_THENE ENDO-1,4-BETA-XYLANASE B PRECURSOR; E=2e-31 PFAM: PF00331; Glycosyl hydrolase family 10; E=0.05.
  
     0.744
RB5316
Pectate lyase; PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp -----gb:; E=6e-30 pir:D72376; pectate lyase - Thermotoga maritima (strain MSB8); E=1e-26 ddbj:BAA96477.1; (AB041769) pectate lyase Pel-4A [Bacillus sp; E=3e-25 PFAM: PF00544; Pectate lyase; E=8.6e-31.
  
     0.696
RB12316
Similar to chitooligosaccharide deacetylase; Best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.24 gb:AAK00156.1; AF222753_11 (AF222753) nodulation; E=0.50 pir:T50960; related to nodulation protein nodB [imported] -; E=0.69 PFAM: PF01522; Polysaccharide deacetylase; E=0.0074.
  
   
 0.518
RB5256
Cellulase; PMID: 1955860 best DB hits: BLAST: pir:B72216; endoglucanase - Thermotoga maritima (strain MSB8); E=7e-85 swissprot:P25472; GUND_CLOCE ENDOGLUCANASE D PRECURSOR; E=3e-52 swissprot:P16218; GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH); E=5e-49 COG: TM1751; COG2730 Endoglucanase; E=6e-86 PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=5.3e-47.
  
   
 0.511
RB10413
Best DB hits: BLAST: gb:AAB89163.1; (AE000959) conserved hypothetical protein; E=6e-09 PFAM: PF00082; Subtilase family; E=5e-12.
       0.452
RB3639
Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:C69797; conserved hypothetical protein yesT - Bacillus subtilis; E=4e-27 gb:AAF25818.1; AF184175_1 (AF184175) cephalosporin C deacetylase; E=2e-23 pir:H69797; rhamnogalacturonan acetylesterase homolog yesY -; E=2e-22.
  
     0.442
RB3514
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11259647.
  
     0.435
RB4561
Beta-hexosaminidase; PMID: 8969205 PMID: 10220172 best DB hits: BLAST: pir:B82755; beta-hexosaminidase precursor XF0847 [imported] -; E=2e-35 swissprot:P96155; HEX1_VIBFU BETA-HEXOSAMINIDASE; E=4e-26 pir:A82301; beta-N-acetylhexosaminidase VC0613 [imported] - Vibrio; E=2e-25 PFAM: PF02838; Glycosyl hydrolase family 20,; E=0.00019 PF00728; Glycosyl hydrolase family 20,; E=5.3e-07.
  
     0.435
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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