STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10785Hypothetical protein; Best DB hits: PFAM: PF00589; Phage integrase family; E=0.063. (429 aa)    
Predicted Functional Partners:
RB10789
Conserved hypothetical protein-putative alkyl hydroperoxide reductase; Best DB hits: BLAST: pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=2e-50 pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=2e-41 gb:AAF87891.1; AC015447_1 (AC015447) Hypothetical protein; E=3e-37 COG: sll1289; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-51 Rv2521; COG1225 Peroxiredoxins; E=4e-06 NMB1958; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.004 PFAM: PF00578; AhpC/TSA family; E=0.0023.
  
    0.469
RB10783
Hypothetical protein.
       0.466
RB10787
Conserved hypothetical protein-putative glycerate kinase; Best DB hits: BLAST: pir:A72236; hypothetical protein TM1585 - Thermotoga maritima; E=8e-33 pir:B71162; hypothetical protein PH0495 - Pyrococcus horikoshii; E=6e-30 swissprot:Q44472; TUD4_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE; E=5e-29 COG: TM1585; COG2379 Putative glycerate kinase; E=8e-34.
       0.426
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.