STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11473Hypothetical protein; Best DB hits: PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.9e-07. (223 aa)    
Predicted Functional Partners:
RB11470
Conserved hypothetical protein-putative phospholipid-binding protein; Best DB hits: BLAST: swissprot:O26373; Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----; E=2e-10 swissprot:O67293; YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----; E=3e-08 swissprot:O58984; YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 -----; E=7e-06 COG: MTH273; COG1881 Phospholipid-binding protein; E=2e-11.
 
     0.899
RB11471
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: pir:T05344; hypothetical protein F8B4.40 - Arabidopsis thaliana; E=0.79.
       0.773
RB11463
Hypothetical protein; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.39.
 
     0.654
RB7120
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:A83355; hypothetical protein PA2336 [imported] - Pseudomonas; E=0.022.
  
     0.581
RB9438
Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=4e-50 embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-45.
  
     0.572
sigW-3
Probable ECF sigma factor; Best DB hits: BLAST: embl:CAC17654.1; (AL450450) putative ECF sigma factor; E=0.003 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma; E=0.005 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=0.005 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=4e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.2e-10.
  
     0.556
RB11476
Conserved hypothetical protein-putative acetyltransferase; PMID: 7610040 best DB hits: BLAST: swissprot:P39368; YJHQ_ECOLI HYPOTHETICAL 20.0 KDA PROTEIN IN; E=6e-21 pir:B82297; probable acetyltransferase VC0655 [imported] - Vibrio; E=7e-13 gb:AAK04154.1; AE006244_3 (AE006244) HYPOTHETICAL PROTEIN; E=6e-10 COG: yjhQ; COG3153 Predicted acetyltransferase; E=6e-22 PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.2e-10.
       0.546
RB11468
Hypothetical protein-putative secreted, membrane associated or paryphoplasmic protein.
       0.515
RB5811
Conserved hypothetical protein; PMID: 11058132 best DB hits: BLAST: ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=9e-05 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.53.
  
     0.498
RB9722
Conserved hypothetical protein-putative phospholipid-binding protein; Best DB hits: BLAST: swissprot:O67293; YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----; E=2e-09 swissprot:Q9Z729; Y877_CHLPN HYPOTHETICAL PROTEIN CPN0877CP0992; E=2e-07 swissprot:O26373; Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----; E=4e-07 COG: aq_1250; COG1881 Phospholipid-binding protein; E=2e-10.
  
     0.493
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.