STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13207Hypothetical protein-signal peptide and transmembrane prediction. (58 aa)    
Predicted Functional Partners:
RB13205
Hypothetical protein.
       0.718
RB13202
Hypothetical protein.
       0.449
RB13209
Conserved hypothetical transmembrane protein-putative transporter; Best DB hits: BLAST: swissprot:P29939; YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO; E=4e-15 pir:H81035; conserved hypothetical protein NMB1840 [imported] -; E=7e-14 pir:D81981; probable integral membrane protein NMA0616 [imported] -; E=2e-13 COG: NMB1840; COG2510 Predicted membrane protein; E=7e-15 PFAM: PF00892; Integral membrane protein DUF6; E=5.4e-17.
       0.406
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.