STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1628PMID: 10761919 best DB hits: BLAST: pir:G81831; probable integral membrane protein NMA2020 [imported] -; E=0.43 pir:F81195; conserved hypothetical protein NMB0465 [imported] -; E=0.55. (170 aa)    
Predicted Functional Partners:
RB1624
Hypothetical protein.
       0.524
glcK
Glucokinase; PMID: 9620975 best DB hits: BLAST: pir:T44787; glucokinase (EC 2.7.1.2) [imported] - Bacillus; E=3e-32 swissprot:P54495; GLK_BACSU GLUCOKINASE (GLUCOSE KINASE) -----; E=8e-32 ddbj:BAB04516.1; (AP001509) glucose kinase [Bacillus halodurans]; E=4e-30 COG: BS_glcK; COG1940 Transcriptional regulators; E=8e-33 PFAM: PF00370; FGGY family of carbohydrate kinases; E=0.071 PF00480; ROK family; E=3.3e-37.
       0.508
lepA-2
GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.418
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.