STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB172Probable transposase; PMID: 10601203 best DB hits: BLAST: gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=6e-41 gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-30 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=4e-26 PFAM: PF01610; Transposase; E=4.2e-28. (315 aa)    
Predicted Functional Partners:
RB168
Transposase; PMID: 8041625 best DB hits: BLAST: gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-21 gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=1e-20 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=1e-09 PFAM: PF01610; Transposase; E=3.9e-09.
     0.993
RB170
Probable transposase; PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) putative transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18.
       0.775
RB171
Putative transposase; Best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 Putative transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40.
       0.773
RB11370
Hypothetical protein; Best DB hits: BLAST: embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.048 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.048 ddbj:BAB07268.1; (AP001519) immunity repressor protein; E=0.057 COG: BH3549; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=3.5e-10.
  
     0.591
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.586
RB5259
Helicase, Snf2 family; Best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=8e-44 pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=6e-42 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=1e-41 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=7e-45 PFAM: PF00176; SNF2 and others N-terminal domain; E=2.4e-43 PF00271; Helicase conserved C-terminal doma; E=1.4e-23.
  
     0.581
RB166
Hypothetical protein.
       0.575
RB11366
Similar to transcription regulator; PMID: 3119860 best DB hits: BLAST: pir:F70829; probable transcription regulator Rv0474 - Mycobacterium; E=0.015 embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.10 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.12 COG: Rv0474; COG1396 Predicted transcriptional regulators; E=0.001 PFAM: PF01381; Helix-turn-helix; E=2.9e-13.
  
     0.568
RB850
Hypothetical protein-signal peptide prediction.
  
     0.564
RB7455
Conserved hypothetical protein; PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1; (AE003803) CG6564 gene product [Drosophila; E=0.010 embl:CAA96576.1; (Z72495) ZP2 [Carassius auratus]; E=0.47.
  
     0.551
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.