STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1870Hypothetical protein-transmembrane prediction. (466 aa)    
Predicted Functional Partners:
RB1866
PMID: 10382966 best DB hits: BLAST: pir:F72742; probable transport ATP-binding protein APE0471 -; E=3e-34 pir:C72303; ABC transporter, ATP-binding protein - Thermotoga; E=3e-34 gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=5e-34 COG: APE0471; COG1131 ABC-type multidrug transport system, ATPase; E=2e-35 PFAM: PF00448; SRP54-type protein, GTPase domain; E=0.16 PF00005; ABC transporter; E=1.4e-42.
       0.773
RB1868
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB1872
Hypothetical protein.
       0.709
RB1860
Hypothetical protein-signal peptide prediction.
       0.543
gntR
PMID: 9384377 best DB hits: BLAST: pir:G69999; transcription regulator GntR related protein ytrA -; E=8e-17 pir:D72336; transcription regulator, GntR family - Thermotoga; E=2e-14 pir:T36493; probable gntR-family transcription regulator -; E=9e-11 COG: BS_ytrA; COG1725 Predicted transcriptional regulators; E=8e-18 BS_yvoA; COG2188 Transcriptional regulators; E=8e-08 BH1164; COG1725 Predicted transcriptional regulators; E=8e-08 PFAM: PF00325; Bacterial regulatory proteins, crp f; E=0.49 PF00392; Bacterial regulatory proteins, gntR; E=9.4e-16.
       0.543
RB1859
Hypothetical protein.
       0.434
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.