STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1922Hypothetical protein. (102 aa)    
Predicted Functional Partners:
RB1923
Hypothetical protein.
       0.572
RB1924
Probable fibrinogen-binding protein homolog-possibly involved in cell-cell attachment; PMID: 99098700 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=6e-11 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=2e-09 gb:AAF76874.1; (AF246145) unknown [uncultured soil microbe; E=5e-07 COG: sll0656_1; COG3204 Uncharacterized BCR; E=9e-05 PFAM: PF00028; Cadherin domain; E=0.88 PF00404; Dockerin type I repeat; E=0.32.
       0.572
RB1920
Hypothetical protein.
       0.547
RB1930
Hypothetical protein-signal peptide and transmembrane prediction.
       0.493
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.