STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpoVanadium chloroperoxidase; PMID: 7744081 best DB hits: BLAST: swissprot:P49053; PRXC_CURIN VANADIUM CHLOROPEROXIDASE (VCPO); E=2e-25 pdb:1VNS; Recombinant Apo-Chloroperoxidase From Curvularia; E=2e-25 pdb:1VNF; Chloroperoxidase From The Fungus Curvularia; E=1e-24 PFAM: PF00404; Dockerin type I repeat; E=0.4 PF02328; Vanadium chloroperoxidase; E=1.5e-20. (706 aa)    
Predicted Functional Partners:
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
     0.723
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.692
RB1661
Hypothetical protein; PMID: 96163873 best DB hits: BLAST: embl:CAA60685.1; (X87241) homologue of Drosophila Fat protein [Homo; E=3e-18 embl:CAB65271.1; (AJ250768) mouse fat 1 cadherin [Mus musculus]; E=1e-17 PFAM: PF00054; Laminin G domain; E=0.3 PF00354; Pentaxin family; E=3.9e-10 PF00059; Lectin C-type domain; E=0.00071.
  
   0.681
RB6431
Hypothetical protein.
  
     0.659
RB11769
PMID: 98010624 best DB hits: BLAST: pir:T08615; aggregation factor core protein MAFp3, isoform C -; E=1e-12 pir:T08617; aggregation factor core protein MAFp3, isoform E -; E=4e-12 pir:T08614; aggregation factor core protein MAFp3, isoform B -; E=5e-08 PFAM: PF00028; Cadherin domain; E=1.6e-12.
  
   0.629
RB3014
PMID: 9371463 best DB hits: BLAST: pir:H69068; cell surface glycoprotein (s-layer protein) related; E=2e-25 pir:A72266; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-04.
  
   0.627
RB3524
Conserved hypothetical protein-possibly heme/hemopexin utilization protein huxB; PMID: 7751272 best DB hits: BLAST: pir:C83558; hypothetical protein PA0692 [imported] - Pseudomonas; E=1e-15 swissprot:P45356; HXB2_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=2e-05 swissprot:P44601; HXB1_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=3e-05 COG: PA0692; COG2831 Hemolysin activation/secretion protein; E=1e-16.
  
    0.619
RB3371
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: swissprot:Q10552; Y893_MYCTU HYPOTHETICAL 36.1 KDA PROTEIN RV0893C; E=3e-10 swissprot:Q50726; YX99_MYCTU HYPOTHETICAL 38.1 KDA PROTEIN RV3399; E=2e-08 pir:A70645; hypothetical protein Rv0726c - Mycobacterium; E=6e-08 COG: Rv0893c; COG3315 O-Methyltransferase involved in polyketide; E=3e-11 PFAM: PF02409; Domain of unknown function DUF142; E=7e-05; Belongs to the UPF0677 family.
  
     0.618
RB2092
Hypothetical protein-transmembrane prediction.
  
    0.617
tolB-2
Probable TolB protein, protein/colicin/DNA uptake system; PMID: 1683466 PMID: 8550462 best DB hits: BLAST: swissprot:O84604; TOLB_CHLTR TOLB PROTEIN PRECURSOR -----pir:; E=0.006 pir:F81653; tolB protein, probable TC0888 [imported] - Chlamydia; E=0.014 pir:E75551; probable acyl-peptide hydrolase - Deinococcus radiodurans; E=0.020 COG: CT599; COG0823 Periplasmic component of the Tol biopolymer transport; E=5e-04 DR0165; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.002 HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=0.005.
  
     0.602
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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