STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2487Conserved hypothetical protein; PMID: 11214968 best DB hits: BLAST: pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=0.011 gb:AAB95303.1; (AC003105) unknown protein [Arabidopsis thaliana]; E=0.023 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=0.001. (297 aa)    
Predicted Functional Partners:
RB2479
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S77382; hypothetical protein sll1456 - Synechocystis sp. (strain; E=3e-12 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08 pir:H70669; hypothetical protein Rv2955c - Mycobacterium; E=4e-07 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=3e-13.
 
     0.914
RB2484
Putative glycosyltransferase; PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) putative glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18.
 
     0.815
RB2480
Hypothetical protein.
       0.773
RB2482
Similar to hexosyltransferase; PMID: 11259647 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=0.001 gb:AAD19925.1; (AF105116) putative glucosyl transferase; E=0.002 embl:CAB75373.1; (AL139298) putative transferase [Streptomyces; E=0.002 COG: TM0622; COG0438 Predicted glycosyltransferases; E=9e-05 PFAM: PF00534; Glycosyl transferases group 1; E=1e-09.
       0.773
RB2485
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22.
       0.773
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
 
  
 0.591
RB2489
Hypothetical protein.
       0.561
RB2490
Hypothetical protein.
       0.561
RB2491
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB92986.1; (AL357152) hypothetical protein SCH18.03c; E=0.19.
       0.561
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
 
  
 0.561
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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