STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2604Hypothetical protein. (50 aa)    
Predicted Functional Partners:
RB2603
Hypothetical protein.
       0.741
RB2605
Similar to azurin precursor; PMID: 2116366 best DB hits: BLAST: pdb:2AZA; A Chain A, Azurin (Oxidized) ----- pdb: 2AZA B Chain; E=0.012 swissprot:P34097; AZUR_PSEPU AZURIN ----- pir: A37338 azurin -; E=0.024 pdb:1NZR; A Chain A, Azurin Mutant With Trp 48 Replaced By Met; E=0.033 COG: PA4922; COG3241 Azurin; E=0.008 PFAM: PF00127; Copper binding proteins, plasto; E=5e-06 PF00034; Cytochrome c; E=0.0036.
       0.529
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.