STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2886Hypothetical protein-putative transmembrane protein. (118 aa)    
Predicted Functional Partners:
RB2885
Conserved hypothetical protein; PMID: 10192388 best DB hits: BLAST: pir:B72102; conserved hypothetical protein CP0535 [imported] -; E=8e-04 pir:A71548; hypothetical protein CT178 - Chlamydia trachomatis; E=0.68 PFAM: PF00901; Orbivirus outer capsid protein VP5; E=0.16.
       0.805
galE-2
Probable UDP-glucose epimerase; PMID: 9427545 best DB hits: BLAST: embl:CAA66078.1; (X97448) galE [Brucella melitensis]; E=2e-07 gb:AAC46054.1; (U78089) UDP-glucose epimerase [Brucella abortus]; E=4e-07 pir:A70392; UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:; E=5e-06 COG: aq_1069; COG1087 UDP-glucose 4-epimerase; E=5e-07 aq_1335; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-05 BS_galE; COG1087 UDP-glucose 4-epimerase; E=3e-05 PFAM: PF00106; short chain dehydrogenase; E=7.4e-05 PF01370; NAD dependent epimerase/dehydratase; E=0.0054.
       0.792
RB2883
Hypothetical protein.
       0.773
RB2889
Similar to ATP synthase alpha subunit; PMID: 10852478 best DB hits: BLAST: embl:CAB67160.1; (AJ271079) ATP synthase alpha subunit [Oenothera; E=0.72.
       0.773
RB2881
gufA protein; PMID: 7934835 best DB hits: BLAST: pir:T29905; hypothetical protein F59A3.4 - Caenorhabditis elegans; E=6e-52 pir:A75447; gufA protein - Deinococcus radiodurans (strain R1); E=1e-51 pir:A69162; gufA protein homolog MTH473 - Methanobacterium; E=1e-51 COG: DR1032; COG0428 Predicted divalent heavy-metal cations transporter; E=1e-52.
       0.566
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.