STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3151Hypothetical protein. (76 aa)    
Predicted Functional Partners:
RB3152
Hypothetical protein.
       0.773
RB3153
Hypothetical protein.
       0.752
RB3154
Hypothetical protein.
       0.730
RB3155
Hypothetical protein.
       0.730
RB3149
Hypothetical protein; Best DB hits: PFAM: PF02413; Domain of unknown function DUF144; E=0.11.
       0.467
RB3157
Probable integrase/recombinase Y4QK; PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: gb:AAA88676.1; (M33633) unknown protein [Transposon Tn21]; E=1e-56 embl:CAA75043.1; (Y14748) int [Corynebacterium glutamicum]; E=4e-56 gb:AAF72980.1; AF255921_1 (AF255921) recombinase [Shigella; E=4e-56 COG: VCA0291; COG0582 Integrase; E=1e-49 PFAM: PF00589; Phage integrase family; E=2.9e-32; Belongs to the 'phage' integrase family.
       0.447
RB3158
Hypothetical protein.
       0.447
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.