STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3245Protein phosphatase 1; PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=3e-27 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=5e-26 embl:CAA10712.1; (AJ132604) pppL protein [Lactococcus lactis]; E=2e-25 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-27 PFAM: PF00481; Protein phosphatase 2C; E=1.2e-09. (335 aa)    
Predicted Functional Partners:
RB6827
Serine/threonine protein kinase; PMID: 9384377 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-35 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-32 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=3e-32 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-36 PFAM: PF00069; Protein kinase domain; E=1.6e-49 PF00480; ROK family; E=0.13.
 
 
 0.856
RB11334
Serine/threonine-protein kinase; PMID: 3291115 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=1e-35 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=8e-34 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=5e-33 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=8e-35 PFAM: PF00069; Protein kinase domain; E=2.6e-37 PF00400; WD domain, G-beta repeat; E=0.013 PF00515; TPR Domain; E=0.0067.
 
 
 0.837
RB1892
Serine/threonine protein kinase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=2e-37 embl:CAB94054.1; (AL358672) putative serinethreonine-protein; E=2e-34 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-33 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=2e-38 PFAM: PF00069; Protein kinase domain; E=5.1e-46 PF00400; WD domain, G-beta repeat; E=0.023.
 
 
 0.835
RB1889
Probable serine/threonine-protein kinase; PMID: 8969512 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=3e-40 swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=2e-38 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=2e-38 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=1e-39 PFAM: PF00069; Protein kinase domain; E=1.1e-41 PF00400; WD domain, G-beta repeat; E=0.0026.
 
 
 0.833
RB1893
Serine/threonine-protein kinase; PMID: 9384377 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=9e-29 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-28 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=6e-28 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=8e-30 PFAM: PF00069; Protein kinase domain; E=8.4e-42 PF00400; WD domain, G-beta repeat; E=0.3.
 
 
 0.833
RB5593
Serine/threonine-protein kinase; PMID: 7768349 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=7e-39 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=3e-38 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=4e-37 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=3e-39 PFAM: PF00069; Protein kinase domain; E=2.2e-27 PF00515; TPR Domain; E=0.89 PF02018; Cellulose binding domain; E=0.037.
 
 
 0.826
pkn2-2
Putative serine/threonine-protein kinase; PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1; (AL358672) putative serinethreonine-protein; E=9e-43 swissprot:P54736; PKN2_MYXXA SERINETHREONINE-PROTEIN KINASE PKN2; E=4e-39 swissprot:Q10697; PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=2e-38 COG: Rv2088; COG0515 Serine/threonine protein kinases; E=2e-39 PFAM: PF00069; Protein kinase domain; E=1.6e-54.
 
   0.816
pknB-2
Probable serine/threonine-protein kinase pknB; PMID: 835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=3e-34 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-33 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=9e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-34 PFAM: PF00069; Protein kinase domain; E=1.3e-46 PF00400; WD domain, G-beta repeat; E=0.00029.
 
 
 0.810
RB5028
PMID: 8969512 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=6e-44 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=1e-37 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=3e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=6e-45 PFAM: PF00069; Protein kinase domain; E=1.5e-45 PF00004; ATPase family associated with vari; E=0.14 PF00005; ABC transporter; E=0.082.
 
 
 0.809
pknB-6
Probable serine/threonine protein kinase; PMID: 99426839 best DB hits: BLAST: embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=1e-38 gb:AAK05985.1; AE006418_5 (AE006418) serinethreonine protein; E=8e-38 gb:AAD42851.1; AF159689_3 (AF159689) serinethreonine kinase PKN3; E=2e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-38 PFAM: PF01610; Transposase; E=0.64 PF00069; Protein kinase domain; E=7.4e-61.
 
 
 0.809
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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