STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3327Hypothetical protein. (102 aa)    
Predicted Functional Partners:
RB3326
Hypothetical protein.
       0.773
RB3328
Hypothetical protein.
       0.773
RB3322
Similar to Cytochrome c; PMID: 2544196 best DB hits: BLAST: swissprot:P56205; CYC_ASPNG CYTOCHROME C ----- pir: A61490; E=0.005 pir:S41568; cytochrome c - Emericella nidulans; E=0.025 swissprot:P38091; CYC_EMENI CYTOCHROME C ----- gb: AAB50255.1; E=0.025 PFAM: PF00034; Cytochrome c; E=0.0014.
       0.572
RB3324
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12004073.
       0.572
RB3321
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:F82461; conserved hypothetical protein VCA0415 [imported] -; E=3e-33 gb:AAB81981.1; (AF025662) unknown [Vibrio cholerae]; E=1e-32 pir:A82473; conserved hypothetical protein VCA0338 [imported] -; E=4e-32 COG: VCA0415; COG3324 Uncharacterized BCR; E=3e-34 PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=0.00045.
       0.428
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.