STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3405Putative hydrolase; PMID: 8843436 PMID: 1850729 best DB hits: BLAST: embl:CAB61926.1; (AL133278) putative hydrolase [Streptomyces; E=1e-109 embl:CAB95281.1; (AL359779) putative hydrolase [Streptomyces; E=4e-58 pir:A39405; beta-galactosidase (EC 3.2.1.23) - Clostridium; E=3e-19 COG: BH2723; COG3250 Beta-galactosidase/beta-glucuronidase; E=1e-18 PFAM: PF02837; Glycosyl hydrolases family 2,; E=1.3e-05 PF00703; Glycosyl hydrolases family 2,; E=7.2e-13. (767 aa)    
Predicted Functional Partners:
abf2
alpha-L-arabinofuranosidase II; PMID: 20125575 best DB hits: BLAST: ddbj:BAB05586.1; (AP001513) BH1867~unknown conserved protein; E=1e-23 pir:B59296; alpha-L-arabinofuranosidase II [validated] -; E=6e-19 embl:CAB89837.1; (AJ242516) hypothetical protein [Salmonella; E=1e-18; Belongs to the glycosyl hydrolase 43 family.
   
 0.793
RB3404
Hypothetical protein.
       0.631
ramA
alfa-L-rhamnosidase; PMID: 10632887 best DB hits: BLAST: embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=1e-103 pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=4e-89 embl:CAB55731.1; (AL117387) putative secreted protein [Streptomyces; E=1e-69 PFAM: PF02083; Urotensin II; E=0.87.
  
   0.610
RB4561
Beta-hexosaminidase; PMID: 8969205 PMID: 10220172 best DB hits: BLAST: pir:B82755; beta-hexosaminidase precursor XF0847 [imported] -; E=2e-35 swissprot:P96155; HEX1_VIBFU BETA-HEXOSAMINIDASE; E=4e-26 pir:A82301; beta-N-acetylhexosaminidase VC0613 [imported] - Vibrio; E=2e-25 PFAM: PF02838; Glycosyl hydrolase family 20,; E=0.00019 PF00728; Glycosyl hydrolase family 20,; E=5.3e-07.
 
 
 0.609
fucA
alpha-L-fucosidase; PMID: 2803312 PMID: 2894306 best DB hits: BLAST: pir:B82515; alpha-L-fucosidase XF2714 [imported] - Xylella; E=4e-71 embl:CAC24067.1; (AL512981) Hypothetical [Sulfolobus; E=3e-67 pir:S10235; alpha-L-fucosidase (EC 3.2.1.51) precursor - rat; E=8e-51 PFAM: PF01120; Alpha-L-fucosidase; E=4.4e-27.
 
   
 0.599
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
  
 0.578
RB3406
Hypothetical protein.
       0.572
RB3403
N-acetylgalactosamine 6-sulfatase (GALNS); PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=8e-37 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=3e-34 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=3e-34 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=1e-16 PFAM: PF00884; Sulfatase; E=6.6e-42.
  
   0.547
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
  
 0.532
RB4699
Conserved hypothetical protein; PMID: 7528875 best DB hits: BLAST: ddbj:BAB04561.1; (AP001510) BH0842~unknown conserved protein; E=2e-09 embl:CAB56146.1; (AL117669) putative large secreted protein; E=7e-07 embl:CAB91126.1; (AL355913) hypothetical protein SC5H4.14; E=0.17.
  
   
 0.507
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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