STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB418Conserved hypothetical protein-putative membrane protein; PMID: 1466286 best DB hits: BLAST: gb:AAG59144.1; AE005625_7 (AE005625) orf, hypothetical protein; E=0.15 pir:I78664; hypothetical 34.1K protein (katg-glda intergenic region); E=0.20 swissprot:P32667; YIJE_ECOLI HYPOTHETICAL 32.9 KD PROTEIN IN; E=0.24 PFAM: PF00892; Integral membrane protein DUF6; E=9.9e-10. (363 aa)    
Predicted Functional Partners:
iunH
Inosine-uridine preferring nucleoside hydrolase; PMID: 8634238 best DB hits: BLAST: pdb:1EZR; A Chain A, Crystal Structure Of Nucleoside Hydrolase; E=3e-32 swissprot:Q27546; IUNH_CRIFA INOSINE-URIDINE PREFERRING NUCLEOSIDE; E=2e-31 pdb:2MAS; A Chain A, Purine Nucleoside Hydrolase With A Transition; E=4e-31 COG: yeiK; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=3e-31 PFAM: PF01156; Inosine-uridine preferring nucle; E=1.9e-51.
       0.773
RB5280
Similar to extracellular sucrase; PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527; extracellular sucrase - Zymomonas mobilis ----- prf:; E=0.10 swissprot:Q60115; INVB_ZYMMO EXTRACELLULAR SUCRASE; E=0.24 gb:AAC36942.1; (L33403) extracellular sucrase [Zymomonas mobilis]; E=0.24.
  
     0.584
RB13259
Best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=3e-16.
  
     0.560
RB9201
Conserved hypothetical protein-putative secreted protein; Best DB hits: BLAST: pir:E72310; hypothetical protein - Thermotoga maritima (strain MSB8); E=8e-06 pir:F83085; conserved hypothetical protein PA4489 [imported] -; E=9e-06 ddbj:BAA12317.1; (D84339) murinoglobulin [Cavia porcellus]; E=9e-05 COG: TM0984; COG2373 Large extracellular alpha-helical protein; E=8e-07.
  
     0.512
RB413
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11997336.
       0.511
RB1470
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02018; Cellulose binding domain; E=0.61.
  
     0.509
RB12586
Hypothetical protein.
  
     0.460
RB423
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:A83440; conserved hypothetical protein PA1644 [imported] -; E=8e-29 pir:F75254; conserved hypothetical protein - Deinococcus radiodurans; E=3e-26 ddbj:BAB05997.1; (AP001515) BH2278~unknown conserved protein; E=1e-24 COG: PA1644; COG1853 Conserved protein/domain typically associated with; E=8e-30.
       0.460
RB419
Probable serine/threonine-protein kinase; PMID: 7768349 best DB hits: BLAST: swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=5e-14 pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=2e-13 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=4e-13 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=5e-15 PFAM: PF00069; Protein kinase domain; E=3.3e-32.
       0.459
suhB
Inositol-1-monophosphatase; PMID: 10747806 best DB hits: BLAST: gb:AAK02399.1; (AE006067) SuhB [Pasteurella multocida]; E=5e-35 ddbj:BAB06354.1; (AP001516) myo-inositol-1(or 4)-monophosphatase; E=2e-33 swissprot:P22783; SUHB_ECOLI EXTRAGENIC SUPPRESSOR PROTEIN SUHB; E=6e-33 COG: BH2635; COG0483 Archaeal fructose-1,6-bisphosphatase and related; E=2e-34 VC2722; COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS); E=4e-11 PFAM: PF00459; Inositol monophosphatase family; E=8.5e-66.
       0.459
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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