STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4248Conserved hypothetical protein; PMID: 21595285 best DB hits: BLAST: pir:E69833; conserved hypothetical protein yhjE - Bacillus subtilis; E=0.65. (195 aa)    
Predicted Functional Partners:
hrpA
ATP-dependent helicase hrpA; PMID: 7899078 best DB hits: BLAST: pir:H83232; probable ATP-dependent helicase PA3297 [imported] -; E=0.0 pir:F82207; ATP-dependent helicase HrpA VC1382 [imported] - Vibrio; E=0.0 swissprot:P43329; HRPA_ECOLI ATP-DEPENDENT HELICASE HRPA -----; E=0.0 COG: PA3297; COG1643 HrpA-like helicases; E=0.0 PFAM: PF00005; ABC transporter; E=0.016 PF00270; DEAD/DEAH box helicase; E=0.66 PF00271; Helicase conserved C-terminal; E=1.3e-12.
   
   0.785
RB4245
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11679351.
       0.773
RB4250
Hypothetical protein.
       0.664
RB4243
Hypothetical protein.
       0.594
RB4233
Hypothetical protein-transmembrane prediction.
       0.449
RB4239
Hypothetical protein-transmembrane prediction.
       0.449
RB4241
Probable RNA polymerase sigma-E factor; PMID: 3052291 PMID: 8052622 best DB hits: BLAST: pir:H75550; RNA polymerase sigma-E factor - Deinococcus radiodurans; E=4e-08 embl:CAB72200.1; (AL138851) putative RNA polymerase sigma factor; E=1e-06 swissprot:P45215; YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR; E=2e-06 COG: DR0180; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-09 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.3e-05.
       0.449
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.