STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB466Hypothetical protein. (81 aa)    
Predicted Functional Partners:
RB468
Hypothetical protein.
       0.773
RB469
Hypothetical protein; Best DB hits: PFAM: PF00665; Integrase core domain; E=0.2.
       0.773
RB470
Probable transposase; PMID: 7518087 best DB hits: BLAST: embl:CAB46576.1; (AJ132945) IS1329 transposase B [Yersinia; E=2e-09 embl:CAB61574.1; (AJ251581) transposase B [Yersinia; E=2e-09 prf:2113421B; transposase [Burkholderia cepacia]; E=4e-09 COG: DRB0019.2; COG2801 Putative transposase; E=5e-12 PFAM: PF00665; Integrase core domain; E=5.4e-05.
       0.678
RB471
Hypothetical protein-transmembrane prediction.
       0.678
RB472
Hypothetical protein.
       0.507
RB473
Hypothetical protein-signal peptide prediction.
       0.503
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.