STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betAGMC oxidoreductase; PMID: 92177421 best DB hits: BLAST: pir:C75453; GMC oxidoreductase - Deinococcus radiodurans (strain R1); E=9e-35 swissprot:Q00593; ALKJ_PSEOL ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=3e-28 embl:CAB51051.1; (AJ233397) alcohol dehydrogenase [Pseudomonas; E=3e-25 COG: DR0965; COG2303 Choline dehydrogenase and related flavoproteins; E=9e-36 PFAM: PF01494; FAD binding domain; E=0.085 PF00732; GMC oxidoreductases; E=2.3e-09 PF01583; Adenylylsulfate kinase; E=0.85. (498 aa)    
Predicted Functional Partners:
RB10451
Best DB hits: BLAST: pir:G70946; probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur; E=3e-18 pir:T14542; choline monooxygenase - beet ----- gb: AAB80954.1; E=2e-15 pir:G83331; anthranilate dioxygenase large subunit PA2512 [imported]; E=4e-14 COG: Rv3161c; COG2146 Ferredoxin subunits of nitrite reductase and; E=3e-19 PFAM: PF00355; Rieske [2Fe-2S] domain; E=1.8e-21.
 
  
 0.937
aas
Acyl-[ACP]--phospholipid O-acyltransferase; PMID: 8300626 best DB hits: BLAST: pir:A81368; probable 2-acylglycerophosphoethanolamine acyltransferase; E=2e-89 swissprot:P31119; AAS_ECOLI AAS BIFUNCTIONAL PROTEIN [INCLUDES:; E=5e-59 gb:AAG57948.1; AE005512_7 (AE005512); E=6e-59 COG: Cj0938c_3; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=6e-66 aas_2; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=6e-50 VNG1339C; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=2e-28 PFAM: PF01553; Acyltransferase; E=7.6e-22 PF00501; AMP-binding enzyme; E=2.4e-07.
    
 0.814
RB2897
Conserved hypothetical protein-putative methyltransferase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05775.1; (AP001514) BH2056~unknown conserved protein in; E=3e-20 pir:T45542; hypothetical protein [imported] - Klebsiella pneumoniae; E=8e-13 gb:AAG10237.1; AF201699_2 (AF201699) phospholipid; E=8e-08 COG: BH2056; COG0030 Dimethyladenosine transferase (rRNA methylation); E=2e-21 APE1011; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=0.008.
     
  0.800
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
psd-2
Phosphatidylserine decarboxylase precursor; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
RB5042
PMID: 9371463 best DB hits: BLAST: pir:D69036; conserved hypothetical protein MTH1267 -; E=2e-14 pir:B75083; probable hydroxyacylglutathione hydrolase (EC 3.1.2.6); E=5e-10 pir:F71229; hypothetical protein PH0096 - Pyrococcus horikoshii; E=6e-07 COG: MTH1267; COG0491 Zn-dependent hydrolases, including glyoxylases; E=1e-15 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=1.5e-30.
     
 0.782
cypX
Probable cytochrome P450 T9E850; PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20.
  
   
 0.582
RB5043
Conserved hypothetical protein-putative Na+/glutamate symporter; PMID: 8905231 best DB hits: BLAST: pir:S76683; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-25 COG: slr0625; COG0786 Na+/glutamate symporter; E=7e-26.
     
 0.581
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
 
   
 0.567
RB11269
Probable cytochrome c; PMID: 10984043 best DB hits: BLAST: pir:A83334; hypothetical protein PA2481 [imported] - Pseudomonas; E=4e-27 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=8e-27 pir:D81360; cytochrome C Cj0874c [imported] - Campylobacter jejuni; E=8e-23 COG: PA2481; COG3258 Cytochrome c; E=4e-28.
   
 
 0.566
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.