STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB533Hypothetical protein. (496 aa)    
Predicted Functional Partners:
RB9698
Best DB hits: BLAST: pir:F83635; hypothetical protein PA0089 [imported] - Pseudomonas; E=4e-31 pir:D83349; hypothetical protein PA2370 [imported] - Pseudomonas; E=1e-05 gb:AAG54528.1; AE005198_9 (AE005198) Z0259 gene product; E=0.001.
  
  
 0.827
RB531
Iron (III) transport system (iron (III)-binding protein); PMID: 2404942 best DB hits: BLAST: pir:S75102; hypothetical protein sll0237 - Synechocystis sp. (strain; E=7e-43 ddbj:BAB04232.1; (AP001508) iron (III) transport system (iron; E=9e-24 ddbj:BAA75385.1; (AB013374) Yvfk [Bacillus halodurans]; E=2e-21 COG: sll0237; COG1840 ABC-type thiamine transport systems, periplasmic; E=6e-44 VC1424; COG0687 Spermidine/putrescine-binding periplasmic protein; E=7e-04 PFAM: PF01547; Bacterial extracellular solut; E=0.027.
       0.577
RB9689
Best DB hits: BLAST: pir:H83634; conserved hypothetical protein PA0083 [imported] -; E=2e-54 gb:AAB92577.1; (AF037441) putative 19.5 kDa protein [Edwardsiella; E=7e-29 pir:A83351; conserved hypothetical protein PA2365 [imported] -; E=8e-28.
  
  
 0.447
RB9690
Best DB hits: BLAST: pir:A83635; conserved hypothetical protein PA0084 [imported] -; E=0.0 gb:AAB92576.1; (AF037441) putative 54.5 kDa protein [Edwardsiella; E=1e-110 pir:B83351; conserved hypothetical protein PA2366 [imported] -; E=1e-109.
  
  
 0.435
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.