STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspG-2PMID: 1640836 PMID: 8407845 best DB hits: BLAST: pir:B70338; general secretion pathway protein G - Aquifex aeolicus; E=0.065 swissprot:P31733; GSPG_AERHY GENERAL SECRETION PATHWAY PROTEIN G; E=0.29 pir:B82670; general secretory pathway protein G precursor XF1519; E=0.83 COG: aq_418; COG2165 General secretory pathway proteins G and H and; E=0.006. (158 aa)    
Predicted Functional Partners:
RB5915
Hypothetical protein.
   
 
  0.920
gspK
Probable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04.
 
   0.901
RB5514
Hypothetical protein.
  
   0.841
RB5516
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.08.
  
    0.806
RB5509
Hypothetical protein.
       0.779
RB5515
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12024217.
       0.773
RB5522
Hypothetical protein.
       0.773
RB5511
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA77335.1; (AB019494) IDN3 [Homo sapiens]; E=0.21 ddbj:BAA77349.1; (AB019602) IDN3-B [Homo sapiens]; E=0.21.
       0.759
RB5523
Hypothetical protein.
       0.757
gspD
PMID: 2677007 best DB hits: BLAST: swissprot:P45758; GSPD_ECOLI PROBABLE GENERAL SECRETION PATHWAY; E=5e-22 swissprot:P15644; GSPD_KLEPN GENERAL SECRETION PATHWAY PROTEIN D; E=2e-21 gb:AAA58785.1; (L33796) EpsD [Vibrio cholerae]; E=2e-18 COG: gspD; COG1450 General secretory pathway protein D; E=5e-23 PFAM: PF00263; Bacterial type II and III secret; E=2.9e-05.
  
    0.628
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.