STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6281Hypothetical protein. (118 aa)    
Predicted Functional Partners:
RB6282
Hypothetical protein.
       0.773
RB6278
Probable cyclophilin type peptidylprolyl isomerase; PMID: 7584044 best DB hits: BLAST: ddbj:BAA07555.1; (D38552) The ha1539 protein is related to; E=1e-19 gb:AAF58019.1; (AE003807) CG7747 gene product [Drosophila; E=2e-18 pir:T48940; hypothetical protein F14L2.150 - Arabidopsis thaliana; E=4e-18 COG: VNG1914G; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=3e-15 PFAM: PF00160; Cyclophilin type peptidyl-prol; E=6.4e-32.
       0.459
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.