STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB629Hypothetical protein-transmembrane prediction. (91 aa)    
Predicted Functional Partners:
RB626
Hypothetical protein; Best DB hits: PFAM: PF00036; EF hand; E=0.00026.
       0.773
RB624
Hypothetical protein.
       0.571
RB625
Hypothetical protein.
       0.571
RB621
Hypothetical protein-putative sigma factor; PMID: 12024217 best DB hits: BLAST: gb:AAB64901.1; AAB64901 (U33050) Spp41p: Negative regulator of prp; E=0.81 swissprot:P38904; SP41_YEAST SPP41 PROTEIN ----- gb: AAA20494.1; E=0.81.
       0.466
RB631
Serine/threonine protein kinase; PMID: 7768349 best DB hits: BLAST: pir:T42100; serinethreonine protein kinase (EC 2.7.1.-) -; E=5e-32 pir:T36502; serinethreonine protein kinase - Streptomyces; E=8e-32 swissprot:P33973; PKN1_MYXXA SERINETHREONINE-PROTEIN KINASE PKN1; E=2e-28 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-29 PFAM: PF00069; Protein kinase domain; E=7e-46 PF00591; Glycosyl transferase family,; E=0.28 PF00515; TPR Domain; E=0.0037.
       0.456
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.