STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6771Hypothetical protein. (356 aa)    
Predicted Functional Partners:
RB6774
Hypothetical protein.
       0.757
rpmA
50S ribosomal protein L27; PMID: 10617197 PMID: 1225626 best DB hits: BLAST: gb:AAC64229.1; (AC005167) 50S ribosomal protein L27 [Arabidopsis; E=4e-19 swissprot:O87885; RL27_LAWIN 50S RIBOSOMAL PROTEIN L27 -----; E=1e-18 pir:T49957; ribosomal protein L27-like - Arabidopsis thaliana; E=2e-18 COG: VC0436; COG0211 Ribosomal protein L27; E=2e-18 PFAM: PF01016; Ribosomal L27 protein; E=6.4e-44; Belongs to the bacterial ribosomal protein bL27 family.
       0.635
RB6776
Hypothetical protein.
       0.561
RB6777
Hypothetical protein.
       0.553
RB6778
Hypothetical protein.
       0.553
pcrA-2
ATP-dependent DNA helicase; PMID: 10192928 PMID: 3029683 best DB hits: BLAST: ddbj:BAB04367.1; (AP001509) ATP-dependent DNA helicase [Bacillus; E=1e-121 swissprot:Q53727; PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA; E=1e-115 swissprot:P56255; PCRA_BACST ATP-DEPENDENT DNA HELICASE PCRA; E=1e-114 COG: BH0648; COG0210 Superfamily I DNA and RNA helicases; E=1e-122 PFAM: PF00580; UvrD/REP helicase; E=5.6e-173.
       0.543
RB6780
Sigma-70 factor; PMID: 7489918 best DB hits: BLAST: ddbj:BAA76622.1; (AB019194) RpoT [Mycobacterium leprae]; E=2e-26 ddbj:BAA76621.1; (AB019193) RpoT [Mycobacterium leprae]; E=2e-26 pir:S61292; transcription initiation factor sigma mysA -; E=4e-26 COG: Rv2703; COG0568 DNA-directed RNA polymerase sigma subunits; E=1e-26 PFAM: PF00140; Sigma-70 factor; E=7.7e-20.
       0.434
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.