STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6793Probable permease; Best DB hits: BLAST: pir:F75057; hypothetical protein PAB2381 - Pyrococcus abyssi (strain; E=2e-13 pir:E71174; hypothetical protein PH0593 - Pyrococcus horikoshii; E=2e-06 pir:F72219; conserved hypothetical protein - Thermotoga maritima; E=1e-04 COG: PAB2381; COG0697 Predicted permeases; E=2e-14 PFAM: PF00892; Integral membrane protein DUF6; E=5.2e-12. (350 aa)    
Predicted Functional Partners:
RB6795
Hypothetical protein.
       0.757
RB6789
Hypothetical protein.
       0.636
RB6790
Hypothetical protein.
       0.636
RB6791
Hypothetical protein.
       0.636
RB6792
Hypothetical protein.
       0.636
RB6796
Hypothetical protein.
       0.536
RB6787
Hypothetical protein-transmembrane prediction.
       0.491
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.