STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6916Hypothetical protein. (67 aa)    
Predicted Functional Partners:
RB6914
Probable acid secreted protein ASPIC; Best DB hits: BLAST: embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=1e-07 embl:CAB98269.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=0.004 PFAM: PF01839; FG-GAP repeat; E=0.037.
       0.576
RB6912
Hypothetical protein-signal peptide and transmembrane prediction.
       0.431
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.