STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7023Hypothetical membrane protein; PMID: 8590279 best DB hits: BLAST: swissprot:Q55909; Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305; E=0.003 embl:CAB61866.1; (AL133252) putative integral membrane protein; E=0.028 gb:AAF69152.1; AC007915_4 (AC007915) F27F5.5 [Arabidopsis; E=0.85 COG: slr0305; COG0398 Uncharacterized ACR; E=3e-04. (247 aa)    
Predicted Functional Partners:
RB7026
Hypothetical protein.
       0.773
RB7027
Hypothetical protein.
       0.572
RB7028
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83295; hypothetical protein PA2794 [imported] - Pseudomonas; E=0.056 gb:AAF60322.1; (AF236853) sialidase [Pseudomonas aeruginosa]; E=0.16 PFAM: PF02012; BNR repeat; E=0.15.
       0.572
merA
Mercuric reductase; PMID: 2536669 PMID: 2067577 best DB hits: BLAST: pir:S75167; mercuric reductase - Synechocystis sp. (strain PCC 6803); E=1e-121 embl:CAA70224.1; (Y09024) mercuric reductase [Bacillus cereus]; E=9e-60 pir:T44505; merA protein [imported] - Clostridium butyricum -----; E=3e-59 COG: slr1849; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=1e-122 PFAM: PF00732; GMC oxidoreductases; E=0.074 PF02254; KTN NAD-binding domain; E=0.7 PF00899; ThiF family; E=0.22.
 
     0.461
RB6747
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8905231 best DB hits: BLAST: pir:S76979; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-56 embl:CAC24148.1; (AL512973) Hypothetical protein [Sulfolobus; E=5e-05 pir:C83581; heme d1 biosynthesis protein NirJ PA0511 [imported] -; E=0.016 COG: slr0304; COG0535 Predicted Fe-S oxidoreductases; E=3e-57.
 
   
 0.455
RB1526
Conserved hypothetical protein; PMID: 11759840 best DB hits: BLAST: pir:S75044; hypothetical protein sll1606 - Synechocystis sp. (strain; E=0.004 pir:E70470; conserved hypothetical protein aq_1986 - Aquifex; E=0.005 COG: sll1606; COG1434 Uncharacterized ACR; E=3e-04 PFAM: PF02698; Uncharacterized ACR, COG1434; E=0.0017.
  
     0.454
RB9640
Probable ceramide glucosyltransferase; Best DB hits: BLAST: embl:CAC11705.1; (AL445064) hypothetical protein [Thermoplasma; E=5e-14 pir:S75560; ceramide glucosyltransferase - Synechocystis sp. (strain; E=2e-11 ddbj:BAA09451.1; (D50840) ceramide glucosyltransferase [Homo; E=0.004 COG: Ta0565; COG1215 Glycosyltransferases, probably involved in cell wall; E=5e-15 slr0813; COG1215 Glycosyltransferases, probably involved in cell; E=2e-12 PFAM: PF00535; Glycosyl transferase; E=0.014.
 
     0.437
RB9648
Probable ceramide glucosyltransferase; Best DB hits: BLAST: embl:CAC11705.1; (AL445064) hypothetical protein [Thermoplasma; E=9e-09 pir:S75560; ceramide glucosyltransferase - Synechocystis sp. (strain; E=3e-08 ddbj:BAA09451.1; (D50840) ceramide glucosyltransferase [Homo; E=7e-05 COG: Ta0565; COG1215 Glycosyltransferases, probably involved in cell wall; E=8e-10 slr0813; COG1215 Glycosyltransferases, probably involved in cell; E=3e-09 sll1004; COG0463 Glycosyltransferases involved in cell wall; E=4e-05 PFAM: PF00535; Glycosyl transferase; E=2e-07.
 
     0.434
RB3732
Best DB hits: BLAST: pir:S76812; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-33 embl:CAA67986.1; (X99672) devC [Anabaena sp.]; E=3e-32 embl:CAA05976.1; (AJ003195) membrane spanning subunit [Anabaena; E=1e-31 PFAM: PF02687; Predicted permease; E=1.1e-09.
 
     0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.