STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8641Hypothetical protein. (92 aa)    
Predicted Functional Partners:
RB8639
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=5e-05 pir:H69064; serinethreonine protein kinase related protein -; E=0.005 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.053 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.27.
       0.531
RB8644
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF29108.1; AF161493_1 (AF161493) HSPC144 [Homo sapiens]; E=7e-35 gb:AAG43118.1; AF059619_1 (AF059619) My005 protein [Homo sapiens]; E=7e-35 pir:C82610; conserved hypothetical protein XF2014 [imported] -; E=3e-31 COG: XF2014; COG2947 Uncharacterized BCR; E=3e-32.
       0.524
ykuE
Best DB hits: BLAST: pir:B69865; probable phosphoesterase (EC 3.1.-.-) ykuE - Bacillus; E=1e-16 gb:AAB08594.1; (U70214) hypothetical [Escherichia coli]; E=1e-15 pir:D64740; probable phosphoesterase (EC 3.1.-.-) yaeI - Escherichia; E=1e-15 COG: BS_ykuE; COG1408 Predicted phosphohydrolases; E=1e-17 PFAM: PF02549; DNA repair exonuclease; E=0.12.
       0.404
sixA
Conserved hypothetical protein-putative phosphohistidine phosphatase; Best DB hits: BLAST: pir:T36773; hypothetical protein SCI28.03c - Streptomyces coelicolor; E=2e-12 pir:T49094; hypothetical protein F4F15.260 - Arabidopsis thaliana; E=5e-12 swissprot:Q11043; YC76_MYCTU HYPOTHETICAL 16.5 KDA PROTEIN RV1276C; E=3e-08 COG: Rv1276c; COG2062 Phosphohistidine phosphatase SixA; E=3e-09 slr1124; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=0.001 Cj1002c; COG2062 Phosphohistidine phosphatase SixA; E=0.002 PFAM: PF00300; Phosphoglycerate mutase family; E=0.013.
       0.404
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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