STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9913Hypothetical protein-signal peptide prediction. (338 aa)    
Predicted Functional Partners:
RB9911
Endo-1,4-beta-xylanase; PMID: 3139632 PMID: 7664125 best DB hits: BLAST: gb:AAA90913.1; (U33060) endo-1,4-beta-xylanase [Thermotoga sp.]; E=2e-33 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=3e-33 swissprot:Q60041; XYNB_THENE ENDO-1,4-BETA-XYLANASE B PRECURSOR; E=2e-31 PFAM: PF00331; Glycosyl hydrolase family 10; E=0.05.
       0.773
RB5363
Flavodoxin; PMID: 1991710 best DB hits: BLAST: swissprot:O67866; FLAV_AQUAE FLAVODOXIN ----- pir: F70479; E=3e-48 swissprot:P18855; FLAV_CLOAB FLAVODOXIN ----- pir: A38177; E=2e-13 pir:G82110; Trp repressor-binding protein VC2166 [imported] - Vibrio; E=6e-13 COG: aq_2096; COG0655 Multimeric flavodoxin WrbA; E=3e-49 AF1520; COG0426 Uncharacterized flavoproteins; E=0.006 PFAM: PF00258; Flavodoxin; E=1.4e-08.
   
    0.537
RB9909
Hypothetical protein-transmembrane prediction.
       0.427
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.421
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.