STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9950Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB66476.1; (AL136541) hypothetical protein [Homo sapiens]; E=0.31 embl:CAA62913.1; (X91803) sodium-calcium exchanger; E=0.43 PFAM: PF00404; Dockerin type I repeat; E=0.19. (736 aa)    
Predicted Functional Partners:
RB10590
PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05.
  
 
   0.518
surE-2
Survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.512
RB9948
Hypothetical protein.
       0.508
selO
Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).
       0.502
RB10354
Hypothetical protein-putative transmembrane protein.
  
     0.480
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
     0.452
RB11769
PMID: 98010624 best DB hits: BLAST: pir:T08615; aggregation factor core protein MAFp3, isoform C -; E=1e-12 pir:T08617; aggregation factor core protein MAFp3, isoform E -; E=4e-12 pir:T08614; aggregation factor core protein MAFp3, isoform B -; E=5e-08 PFAM: PF00028; Cadherin domain; E=1.6e-12.
  
    0.451
RB1924
Probable fibrinogen-binding protein homolog-possibly involved in cell-cell attachment; PMID: 99098700 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=6e-11 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=2e-09 gb:AAF76874.1; (AF246145) unknown [uncultured soil microbe; E=5e-07 COG: sll0656_1; COG3204 Uncharacterized BCR; E=9e-05 PFAM: PF00028; Cadherin domain; E=0.88 PF00404; Dockerin type I repeat; E=0.32.
  
    0.438
RB10196
Best DB hits: BLAST: pir:S76571; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-06 pir:C72255; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-05 swissprot:P38527; RHO_THEMA TRANSCRIPTION TERMINATION FACTOR RHO; E=0.71 COG: sll0185; COG3330 Uncharacterized BCR; E=1e-07.
  
     0.435
RB7196
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S74786; hypothetical protein slr1083 - Synechocystis sp. (strain; E=3e-16 embl:CAA77141.1; (Y18353) hypothetical protein [Thermus; E=2e-14 embl:CAA71549.1; (Y10525) arg-ORF1 [Thermus thermophilus]; E=2e-14.
  
     0.432
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.