STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_0648Hypothetical protein; Identified by Glimmer2; putative. (253 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.867
DR_0647
Cell division cycle protein 48-related protein; Similar to SP:P54774 PID:862480 percent identity: 62.63; identified by sequence similarity; putative; Belongs to the AAA ATPase family.
  
 0.862
DR_0649
Hypothetical protein; Identified by Glimmer2; putative.
      0.862
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.858
DR_A0287
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.798
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.784
DR_0692
Nitrogen regulatory protein P-II; Similar to GB:L77117 SP:Q60381 PID:1592259 percent identity: 73.58; identified by sequence similarity; putative; Belongs to the P(II) protein family.
    
 
 0.777
DR_1961
Ankyrin-related protein; Similar to SP:P98150 PID:407031 percent identity: 52.68; identified by sequence similarity; putative.
  
 0.725
DR_A0257
Ankyrin-related protein; Similar to PID:1881698 percent identity: 58.82; identified by sequence similarity; putative.
  
 0.725
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.720
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.