STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_1159Transcriptional regulator, MarR family; Similar to GB:X74409 SP:P42195 PID:396458 percent identity: 56.72; identified by sequence similarity; putative. (181 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
      
 0.737
DR_1161
Conserved hypothetical protein; Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo- 4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU).
  
    0.551
DR_1160
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
       0.544
DR_1295
PecM-related protein; Similar to SP:P36545 PID:440181 GB:U00096 PID:1787033 percent identity: 67.51; identified by sequence similarity; putative.
  
     0.446
DR_2341
birA bifunctional protein; Similar to SP:P42975 PID:1146239 PID:755608 PID:773349 GB:AL009126 percent identity: 100.00; identified by sequence similarity; putative.
     
 0.427
DR_2398
Conserved hypothetical protein; Similar to GP:2815343 percent identity: 58.15; identified by sequence similarity; putative.
  
     0.416
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.