STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsrRibonucleoprotein Ro/SS-A-related protein; Binds to several small RNAs that accumulate during recovery from UV irradiation. Contributes to the resistance of D.radiodurans to ultraviolet irradiation. Belongs to the Ro 60 kDa family. (531 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 
 0.942
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.731
nos
Nitric oxide synthase-related protein; Catalyzes the production of nitric oxide. The complex between TrpRS II and nitric oxide synthase oxygenase catalyzes the regioselective nitration of tryptophan at the 4-position. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
  
     0.584
DR_1261
Hypothetical protein; Identified by Glimmer2; putative.
       0.542
DR_2546
Conserved hypothetical protein; Similar to GB:U00096 PID:1788385 percent identity: 47.05; identified by sequence similarity; putative.
  
     0.520
DR_0535
Conserved hypothetical protein; Similar to GP:1575691 percent identity: 55.08; identified by sequence similarity; putative.
  
     0.502
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (By similarity). Belongs to the universal ribosomal protein uL2 family.
    
   0.499
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.499
DR_1263
Conserved hypothetical protein; Similar to GP:3319721 percent identity: 64.34; identified by sequence similarity; putative.
 
     0.494
DR_1769
Serine/threonine protein kinase-related protein; Plays an important role in resistance to desiccation and radiation, maybe by protecting genome integrity under extreme conditions.
  
   
 0.473
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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