STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplF50S ribosomal protein L6; It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity). This protein binds to the 23S rRNA, and is important in its secondary structure (212 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27; Binds the 5S and 23S rRNAs and also the tRNA in the P site
  
 0.999
rplU
50S ribosomal protein L21; Binds directly to 23S rRNA, probably serving to organize its structure
 
 
 0.999
rplI
50S ribosomal protein L9; Binds to the 23S rRNA and protein L31
  
 0.999
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to the 23S rRNA
 
 0.999
rpsI
30S ribosomal protein S9; Similar to GB:AL009126 percent identity: 71.43; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS9 family
 
 
 0.999
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy
 
 
 0.999
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
 
 
 0.999
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes
 
 
 0.999
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
 
 
 0.999
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly (By similarity); Belongs to the universal ribosomal protein uL4 family
 
 
 0.999
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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