STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssEType VI secretion system needle hub protein TssE. (135 aa)    
Predicted Functional Partners:
tssG
Type VI secretion system protein TssG.
 
  
 0.994
tssK
Type VI secretion system protein TssK.
 
  
 0.993
tssB
Type VI secretion system needle sheath protein TssB.
 
  
 0.990
tssC
Type VI secretion system needle sheath protein TssC.
 
  
 0.977
tssF
Type VI secretion system protein TssF.
 
  
 0.970
tssH
Type VI secretion system ATPase TssH, putative chaperone; Belongs to the ClpA/ClpB family.
 
  
 0.934
tssL
Type VI secretion system inner membrane protein TssL.
 
  
 0.915
GSU0983
Phage tail spike protein, putative.
 
  
 0.902
tssJ
Type VI secretion system outer membrane lipoprotein TssJ.
  
  
 0.900
GSU3167
Type VI secretion system DUF2094 and ImpA-related domain protein.
 
  
 0.893
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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