STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aplDSodium/solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (507 aa)    
Predicted Functional Partners:
GSU0517
Nucleotidyltransferase DUF294, putative.
 
    0.943
GSU1067
Nucleotidyltransferase DUF294, putative.
 
  
 0.884
GSU0519
Hypothetical protein.
  
    0.838
GSU0516
TIM alpha/beta-barrel protein.
 
     0.771
GSU1069
Protein of unknown function DUF485.
 
  
 0.735
GSU2353
Protein of unknown function DUF485.
 
  
 0.735
GSU1071
Protein of unknown function DUF485.
 
  
 0.734
truD
tRNA pseudouridine 13 synthase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
     0.613
trmB
tRNA (N7-methyl-G46)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.608
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.554
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.