Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GSU0272 | GSU1464 | GSU0272 | GSU1464 | Hypothetical protein. | LysM domain lipoprotein. | 0.603 |
GSU0272 | wrbA | GSU0272 | GSU0804 | Hypothetical protein. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.515 |
GSU0802 | fxsA | GSU0802 | GSU0805 | Oxidoreductase, short-chain dehydrogenase/reductase family. | Cytoplasmic membrane protein FxsA. | 0.514 |
GSU0802 | htpG | GSU0802 | GSU2390 | Oxidoreductase, short-chain dehydrogenase/reductase family. | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | 0.674 |
GSU0802 | ppsA | GSU0802 | GSU0803 | Oxidoreductase, short-chain dehydrogenase/reductase family. | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | 0.808 |
GSU0802 | wrbA | GSU0802 | GSU0804 | Oxidoreductase, short-chain dehydrogenase/reductase family. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.741 |
GSU1464 | GSU0272 | GSU1464 | GSU0272 | LysM domain lipoprotein. | Hypothetical protein. | 0.603 |
GSU1464 | wrbA | GSU1464 | GSU0804 | LysM domain lipoprotein. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.535 |
fxsA | GSU0802 | GSU0805 | GSU0802 | Cytoplasmic membrane protein FxsA. | Oxidoreductase, short-chain dehydrogenase/reductase family. | 0.514 |
fxsA | ppsA | GSU0805 | GSU0803 | Cytoplasmic membrane protein FxsA. | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | 0.505 |
fxsA | wrbA | GSU0805 | GSU0804 | Cytoplasmic membrane protein FxsA. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.543 |
htpG | GSU0802 | GSU2390 | GSU0802 | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | Oxidoreductase, short-chain dehydrogenase/reductase family. | 0.674 |
htpG | pnp | GSU2390 | GSU1593 | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.521 |
htpG | rpoS | GSU2390 | GSU1525 | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | RNA polymerase sigma-38 factor, stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.659 |
htpG | sodA | GSU2390 | GSU1158 | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | Superoxide dismutase, iron/manganese-containing. | 0.520 |
htpG | wrbA | GSU2390 | GSU0804 | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.593 |
pnp | htpG | GSU1593 | GSU2390 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity. | 0.521 |
pnp | sodA | GSU1593 | GSU1158 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Superoxide dismutase, iron/manganese-containing. | 0.662 |
pnp | wrbA | GSU1593 | GSU0804 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | NAD(P)H:quinone oxidoreductase flavoprotein WrbA. | 0.603 |
ppsA | GSU0802 | GSU0803 | GSU0802 | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | Oxidoreductase, short-chain dehydrogenase/reductase family. | 0.808 |
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