STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilA-NGeopilin domain 1 protein. (90 aa)    
Predicted Functional Partners:
pilA-C
Geopilin domain 2 protein.
  
 
 0.999
pilC
Type IV pilus inner membrane protein PilC.
 
   
 0.874
pilT-4
Twitching motility pilus retraction protein.
 
  
 0.861
pilM
Type IV pilus biogenesis ATPase PilM.
 
   
 0.817
pilT-1
Twitching motility pilus retraction protein.
 
   
 0.778
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.726
pilY1-2
Type IV pilus assembly protein PilY1.
 
  
 0.707
pilW-1
Type IV pilus minor pilin PilW.
  
  
 0.705
pilY1-1
Type IV pilus assembly protein PilY1.
 
  
 0.705
pilT-3
Twitching motility pilus retraction protein.
 
   
 0.699
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.