Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MG_007 | MG_009 | MG_007 | MG_009 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | 0.861 |
| MG_007 | MG_010 | MG_007 | MG_010 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | DNA primase-related protein; Identified by similarity to EGAD:56796; match to protein family HMM PF01751; match to protein family HMM TIGR00646. | 0.686 |
| MG_007 | gyrA | MG_007 | MG_004 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.782 |
| MG_007 | gyrB | MG_007 | MG_003 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.825 |
| MG_007 | mnmE | MG_007 | MG_008 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.823 |
| MG_007 | serS | MG_007 | MG_005 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.798 |
| MG_007 | tmk | MG_007 | MG_006 | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.932 |
| MG_009 | MG_007 | MG_009 | MG_007 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | 0.861 |
| MG_009 | MG_010 | MG_009 | MG_010 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | DNA primase-related protein; Identified by similarity to EGAD:56796; match to protein family HMM PF01751; match to protein family HMM TIGR00646. | 0.678 |
| MG_009 | MG_279 | MG_009 | MG_279 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | Expressed protein of unknown function; MG279 has 2 transmembrane regions. The expression of this M. genitalium protein was reported in a proteome analysis (Eur. J. Biochem. 267, 1571-1582 (2000)); identified by similarity to EGAD:57048. | 0.606 |
| MG_009 | gyrA | MG_009 | MG_004 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.783 |
| MG_009 | gyrB | MG_009 | MG_003 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.740 |
| MG_009 | metG | MG_009 | MG_021 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.838 |
| MG_009 | mnmE | MG_009 | MG_008 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.850 |
| MG_009 | rsmA | MG_009 | MG_463 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.604 |
| MG_009 | serS | MG_009 | MG_005 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.821 |
| MG_009 | tmk | MG_009 | MG_006 | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.846 |
| MG_010 | MG_007 | MG_010 | MG_007 | DNA primase-related protein; Identified by similarity to EGAD:56796; match to protein family HMM PF01751; match to protein family HMM TIGR00646. | DNA polymerase III delta prime subunit, putative; Identified by similarity to EGAD:56824. | 0.686 |
| MG_010 | MG_009 | MG_010 | MG_009 | DNA primase-related protein; Identified by similarity to EGAD:56796; match to protein family HMM PF01751; match to protein family HMM TIGR00646. | Deoxyribonuclease, TatD family, putative; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. | 0.678 |
| MG_010 | gyrA | MG_010 | MG_004 | DNA primase-related protein; Identified by similarity to EGAD:56796; match to protein family HMM PF01751; match to protein family HMM TIGR00646. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.692 |
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