STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p37Phosphonate ABC transporter, substrate binding protein (P37), putative; P37 is part of a high-affinity transport system. (368 aa)    
Predicted Functional Partners:
p69
Phosphonate ABC transporter, permease protein (P69), putative; Probably part of a high-affinity transport system.
 
  
 0.997
p29
Phosphonate ABC transporter, ATP-binding protein, putative; Part of a high-affinity transport system.
 
  
 0.992
MG_064
ABC transporter, permease protein, putative; MG064 and MG065 comprise a likely ABC transporter cassette. There is no likely substrate binding protein in the genome vicinity. MG064 has 8 transmembrane regions; identified by similarity to EGAD:56854; match to protein family HMM PF02687.
  
   
 0.904
MG_260
Lipoprotein, putative; Identified by similarity to EGAD:57182; match to protein family HMM PF03202; match to protein family HMM PF03305.
  
     0.775
MG_185
Lipoprotein, putative; Identified by similarity to EGAD:36928; match to protein family HMM PF03202; match to protein family HMM PF03305.
  
     0.774
MG_366
Conserved hypothetical protein; Identified by similarity to EGAD:57141.
  
   
 0.752
MG_061
Major Facilitator Superfamily (MFS) transporter. MG061 has 11 transmembrane regions; identified by similarity to EGAD:56861; match to protein family HMM PF07672.
  
     0.712
MG_354
Conserved hypothetical protein; MG354 has 1 transmembrane region; identified by similarity to EGAD:56836.
      
 0.683
nusB
MG027 was recently shown to encode a protein with structural similarity to NusB. Liu, J. et al. 2004 'A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins' Proteins 55:1082-6; identified by similarity to EGAD:56746.
      
 0.640
MG_226
MG226 is a member of the Amino Acid-Polyamine-Organocation (APC) family; identified by similarity to EGAD:57024; match to protein family HMM PF00324; To M.genitalium MG225.
  
     0.632
Your Current Organism:
Mycoplasma genitalium
NCBI taxonomy Id: 243273
Other names: M. genitalium G37, Mycoplasma genitalium ATCC 33530, Mycoplasma genitalium G37, Mycoplasma genitalium str. G37, Mycoplasma genitalium strain G37
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