STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_0471BNR domain protein; Identified by match to protein family HMM PF02012. (543 aa)    
Predicted Functional Partners:
TDE_1453
Alpha-galactosidase; Identified by similarity to SP:P27756; match to protein family HMM PF02065.
     
  0.900
TDE_2721
Helicase domain protein; Identified by match to protein family HMM PF00271.
   
    0.785
TDE_1723
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.699
TDE_0480
Identified by match to protein family HMM PF01120.
 
   
 0.676
TDE_2209
CarB family protein; Identified by similarity to SP:P38100.
   
    0.656
TDE_2138
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
     
 0.606
rplV
Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
      
 0.603
tdeIIIM
Type II DNA modification methyltransferase M.TdeIII; Identified by similarity to SP:Q58843.
      
 0.590
tdeIIIR
Type II restriction endonuclease TdeIII; Identified by similarity to SP:Q58844.
      
 0.587
TDE_0760
Conserved domain protein; Identified by similarity to OMNI:DR1623.
      
 0.581
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.