node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TDE_0073 | TDE_1039 | TDE_0073 | TDE_1039 | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | 0.974 |
TDE_0073 | birA | TDE_0073 | TDE_0041 | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.550 |
TDE_0073 | coaD | TDE_0073 | TDE_1375 | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.751 |
TDE_0073 | topA | TDE_0073 | TDE_1208 | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.637 |
TDE_0073 | truB | TDE_0073 | TDE_1104 | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.701 |
TDE_1038 | TDE_1039 | TDE_1038 | TDE_1039 | Conserved domain protein; Identified by similarity to OMNI:SP0358. | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | 0.581 |
TDE_1038 | birA | TDE_1038 | TDE_0041 | Conserved domain protein; Identified by similarity to OMNI:SP0358. | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.412 |
TDE_1038 | rpsO | TDE_1038 | TDE_1040 | Conserved domain protein; Identified by similarity to OMNI:SP0358. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.893 |
TDE_1039 | TDE_0073 | TDE_1039 | TDE_0073 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Riboflavin biosynthesis protein RibF, putative; Identified by similarity to SP:P08391; match to protein family HMM PF01687; Belongs to the ribF family. | 0.974 |
TDE_1039 | TDE_1038 | TDE_1039 | TDE_1038 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Conserved domain protein; Identified by similarity to OMNI:SP0358. | 0.581 |
TDE_1039 | TDE_1043 | TDE_1039 | TDE_1043 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Membrane protein, putative; Identified by similarity to OMNI:TP0884; match to protein family HMM PF03739. | 0.524 |
TDE_1039 | birA | TDE_1039 | TDE_0041 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.550 |
TDE_1039 | coaD | TDE_1039 | TDE_1375 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.564 |
TDE_1039 | dut | TDE_1039 | TDE_1042 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Deoxyuridine 5'triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.541 |
TDE_1039 | pnp | TDE_1039 | TDE_1041 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.636 |
TDE_1039 | rpsO | TDE_1039 | TDE_1040 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.861 |
TDE_1039 | topA | TDE_1039 | TDE_1208 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.637 |
TDE_1039 | truB | TDE_1039 | TDE_1104 | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.579 |
TDE_1043 | TDE_1039 | TDE_1043 | TDE_1039 | Membrane protein, putative; Identified by similarity to OMNI:TP0884; match to protein family HMM PF03739. | Riboflavin biosynthesis protein, putative; Identified by similarity to SP:P08391. | 0.524 |
TDE_1043 | dut | TDE_1043 | TDE_1042 | Membrane protein, putative; Identified by similarity to OMNI:TP0884; match to protein family HMM PF03739. | Deoxyuridine 5'triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.800 |