STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_1413Cytidylyltransferase/phosphoenolpyruvate phosphomutase, putative; Identified by similarity to SP:P33182; match to protein family HMM PF01467; match to protein family HMM TIGR00125. (433 aa)    
Predicted Functional Partners:
TDE_1414
Phosphonopyruvate decarboxylase, putative; Identified by similarity to SP:O86938; match to protein family HMM PF02775.
 
 0.999
TDE_1415
Nucleotidyl transferase/aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
  
 0.995
TDE_1416
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
     
 0.865
TDE_1417
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
 0.853
TDE_0040
Identified by match to protein family HMM PF00501.
  
  
 0.797
TDE_1435
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.685
TDE_1260
Cholinephosphate cytidylyltransferase/choline kinase; Identified by similarity to GP:2708632; similarity to GP:20150595; match to protein family HMM PF00483; match to protein family HMM PF01633.
 
  
 0.684
TDE_1418
Conserved hypothetical protein; Identified by similarity to GP:3724313.
       0.681
TDE_1917
Cytidylyltransferase domain protein; Identified by match to protein family HMM PF02348.
  
    0.639
TDE_1419
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.617
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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