STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_0412Hypothetical protein; Identified by Glimmer2; putative. (463 aa)    
Predicted Functional Partners:
TDE_0411
Adenylate/guanylate cyclase catalytic domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.
       0.773
TDE_0413
Lipoprotein, putative.
       0.757
TDE_0414
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
TDE_0409
Hypothetical protein; Identified by Glimmer2; putative.
       0.752
TDE_0410
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
       0.752
TDE_0415
Lipoprotein, putative; Identified by match to protein family HMM TIGR01781.
      
0.509
TDE_0416
Bacteriocin-type signal domain protein.
       0.509
TDE_0408
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF00175.
       0.439
gltA
Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316.
       0.428
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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