Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TDE_1258 | grdA | TDE_1258 | TDE_0745 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | 0.812 |
| TDE_1258 | grdB-1 | TDE_1258 | TDE_0078 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex selenoprotein GrdB1; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01918. | 0.789 |
| TDE_1258 | grdB-2 | TDE_1258 | TDE_2119 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex selenoprotein GrdB2; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918. | 0.790 |
| TDE_1258 | grdC | TDE_1258 | TDE_0240 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex protein GrdC; Identified by similarity to SP:P54935. | 0.785 |
| TDE_1258 | grdD | TDE_1258 | TDE_0239 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex protein GrdD; Identified by similarity to GP:2708734; match to protein family HMM PF02504. | 0.799 |
| TDE_1258 | grdE-1 | TDE_1258 | TDE_0077 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex proprotein GrdE1; Identified by similarity to GP:11065687. | 0.793 |
| TDE_1258 | grdE-2 | TDE_1258 | TDE_2120 | grdX protein; Identified by similarity to GP:11065684. | Glycine reductase complex proprotein GrdE2; Identified by similarity to GP:11065687. | 0.795 |
| grdA | TDE_1258 | TDE_0745 | TDE_1258 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | grdX protein; Identified by similarity to GP:11065684. | 0.812 |
| grdA | grdB-1 | TDE_0745 | TDE_0078 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex selenoprotein GrdB1; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01918. | 0.815 |
| grdA | grdB-2 | TDE_0745 | TDE_2119 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex selenoprotein GrdB2; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918. | 0.876 |
| grdA | grdC | TDE_0745 | TDE_0240 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex protein GrdC; Identified by similarity to SP:P54935. | 0.805 |
| grdA | grdD | TDE_0745 | TDE_0239 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex protein GrdD; Identified by similarity to GP:2708734; match to protein family HMM PF02504. | 0.816 |
| grdA | grdE-1 | TDE_0745 | TDE_0077 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex proprotein GrdE1; Identified by similarity to GP:11065687. | 0.813 |
| grdA | grdE-2 | TDE_0745 | TDE_2120 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Glycine reductase complex proprotein GrdE2; Identified by similarity to GP:11065687. | 0.813 |
| grdA | serS | TDE_0745 | TDE_2307 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.585 |
| grdA | trxA | TDE_0745 | TDE_0744 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Thioredoxin; Identified by similarity to SP:P21610; match to protein family HMM PF00085; Belongs to the thioredoxin family. | 0.715 |
| grdA | trxB | TDE_0745 | TDE_0743 | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292. | 0.529 |
| grdB-1 | TDE_1258 | TDE_0078 | TDE_1258 | Glycine reductase complex selenoprotein GrdB1; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01918. | grdX protein; Identified by similarity to GP:11065684. | 0.789 |
| grdB-1 | grdA | TDE_0078 | TDE_0745 | Glycine reductase complex selenoprotein GrdB1; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01918. | Glycine reductase complex selenoprotein GrdA; In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated selenoether and the respective amine. By action of component PC, acetyl phosphate is formed, leaving component PA in its oxidized state. Finally component PA becomes reduced by the thioredoxin system to start a new catalytic cycle of reductive deamination (By similarity). | 0.815 |
| grdB-1 | grdC | TDE_0078 | TDE_0240 | Glycine reductase complex selenoprotein GrdB1; Selenoprotein.identified by similarity to SP:P52217; match to protein family HMM TIGR01918. | Glycine reductase complex protein GrdC; Identified by similarity to SP:P54935. | 0.786 |
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