node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TDE_0056 | cmk-2 | TDE_0056 | TDE_2080 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.778 |
TDE_0056 | nusA | TDE_0056 | TDE_1107 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.863 |
TDE_0056 | nusB | TDE_0056 | TDE_1657 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.870 |
TDE_0056 | rpoA | TDE_0056 | TDE_0791 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
TDE_0056 | rpsJ | TDE_0056 | TDE_0766 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.713 |
TDE_0056 | truB | TDE_0056 | TDE_1104 | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.406 |
TDE_1656 | TDE_1658 | TDE_1656 | TDE_1658 | Lipoprotein, putative. | Basic membrane protein, putative; Identified by similarity to SP:P29725. | 0.786 |
TDE_1656 | nusB | TDE_1656 | TDE_1657 | Lipoprotein, putative. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.809 |
TDE_1658 | TDE_1656 | TDE_1658 | TDE_1656 | Basic membrane protein, putative; Identified by similarity to SP:P29725. | Lipoprotein, putative. | 0.786 |
TDE_1658 | cmk-2 | TDE_1658 | TDE_2080 | Basic membrane protein, putative; Identified by similarity to SP:P29725. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.522 |
TDE_1658 | nusB | TDE_1658 | TDE_1657 | Basic membrane protein, putative; Identified by similarity to SP:P29725. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.828 |
cmk-2 | TDE_0056 | TDE_2080 | TDE_0056 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DNA-directed RNA polymerase, omega subunit, putative; Identified by match to protein family HMM PF01192. | 0.778 |
cmk-2 | TDE_1658 | TDE_2080 | TDE_1658 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Basic membrane protein, putative; Identified by similarity to SP:P29725. | 0.522 |
cmk-2 | folD | TDE_2080 | TDE_0013 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.633 |
cmk-2 | nusA | TDE_2080 | TDE_1107 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.989 |
cmk-2 | nusB | TDE_2080 | TDE_1657 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.858 |
cmk-2 | rpoA | TDE_2080 | TDE_0791 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.986 |
cmk-2 | rpsJ | TDE_2080 | TDE_0766 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.987 |
cmk-2 | truB | TDE_2080 | TDE_1104 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.926 |
fmt | folD | TDE_1644 | TDE_0013 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.985 |